ERR11406372

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Pseudomonas aeruginosa

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.27 measured

checksum ok yes reported

total bases 2460122739 reported

total reads 17397390 reported

n content pct 0.041 measured

pct q20 bases 97.5 measured

pct q30 bases 93.9 measured

pct reads q30 96.7 measured

sampled bases 110187601 measured

sampled reads 778944 measured

gc content pct 65.8 measured

polyg tail pct 0.06 measured

read length sd 20.7 measured

quality dropoff 0.1 measured

read length max 151 measured

read length min 35 measured

read length n50 150 measured

max base quality 37 measured

mean read length 141.5 measured

max n pct per pos 0.178 measured

mean base quality 35.9 measured

pct reads lt 100bp 6.5 measured

read length median 150 measured

adapter content pct 0 measured

median read quality 36.8 measured

duplication rate pct 21.66 measured

overrepresented top pct 0.14 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%

duplication rate pct 21.66 measured ×0.5 57%

adapter content pct 0 measured ×0.4 100%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0