ERR11889981

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Enterococcus faecium

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 5.12 measured

checksum ok yes reported

total bases 728942986 reported

total reads 3544532 reported

n content pct 0.007 measured

pct q20 bases 96.6 measured

pct q30 bases 95.5 measured

pct reads q30 96.9 measured

sampled bases 73719254 measured

sampled reads 360145 measured

gc content pct 38.1 measured

polyg tail pct 0 measured

read length sd 56.3 measured

quality dropoff 3.4 measured

read length max 251 measured

read length min 35 measured

read length n50 250 measured

max base quality 40 measured

mean read length 204.7 measured

max n pct per pos 0.048 measured

mean base quality 37 measured

pct reads lt 100bp 6.11 measured

read length median 236 measured

adapter content pct 0 measured

median read quality 38 measured

duplication rate pct 17.2 measured

overrepresented top pct 0.05 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

duplication rate pct 17.2 measured ×0.5 71%

adapter content pct 0 measured ×0.4 100%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0