← Dataset search
ERR11889991
ENAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
93/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Enterococcus faecium
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
6.22
measured
checksum ok
yes
reported
total bases
645553296
reported
total reads
3187202
reported
n content pct
2.117
measured
pct q20 bases
90.9
measured
pct q30 bases
88
measured
pct reads q30
88.1
measured
sampled bases
68217438
measured
sampled reads
337008
measured
gc content pct
38
measured
polyg tail pct
0
measured
read length sd
63.8
measured
quality dropoff
3.7
measured
read length max
251
measured
read length min
35
measured
read length n50
251
measured
max base quality
40
measured
mean read length
202.4
measured
max n pct per pos
0.127
measured
mean base quality
34.9
measured
pct reads lt 100bp
10.64
measured
read length median
249
measured
adapter content pct
0
measured
median read quality
37.1
measured
duplication rate pct
10.21
measured
overrepresented top pct
0.01
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 93/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
88
measured
×1
90%
duplication rate pct
10.21
measured
×0.5
93%
adapter content pct
0
measured
×0.4
100%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0