Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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ERR13472822

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Sponge (Sycon ciliatum) bulk-RNA-seq on HiSeq 1500 with 5.2 million 92 bp reads at 98.7% Q20 and 97% Q30 provides high-quality transcriptome data. The 48.2% GC is consistent with invertebrate genomes; suitable for studying developmental gene expression, regeneration, or evolution in early-branching metazoans.

Data type / assay
bulk-RNA-seq
Organism
Sycon ciliatum
Instrument
Illumina HiSeq 1500
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 479028728 reported
total reads 5206834 reported
n content pct 0 measured
pct q20 bases 98.7 measured
pct q30 bases 97 measured
gc content pct 48.2 measured
mean read length 92 measured
mean base quality 37.2 measured
adapter content pct 0 measured
duplication rate pct 48.98 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97 measured ×1 100%
mean base quality 37.2 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 48.98 measured ×0.4 58%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 50