ERR1698640

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Salmonella enterica

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 5.85 measured

checksum ok yes reported

total bases 1003541713 reported

total reads 2096215 reported

n content pct 0.006 measured

pct q20 bases 91.7 measured

pct q30 bases 87.6 measured

pct reads q30 86.4 measured

sampled bases 67035977 measured

sampled reads 281972 measured

gc content pct 53.3 measured

polyg tail pct 0.01 measured

read length sd 37.6 measured

quality dropoff 3.2 measured

read length max 251 measured

read length min 35 measured

read length n50 251 measured

max base quality 40 measured

mean read length 237.7 measured

max n pct per pos 0.042 measured

mean base quality 34.6 measured

pct reads lt 100bp 2.48 measured

read length median 251 measured

adapter content pct 0 measured

median read quality 36.3 measured

duplication rate pct 8.28 measured

overrepresented top pct 0.04 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.6 measured ×1 88%

duplication rate pct 8.28 measured ×0.5 99%

adapter content pct 0 measured ×0.4 100%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0