ERR1698648

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Salmonella enterica

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 5.92 measured

checksum ok yes reported

total bases 533107871 reported

total reads 1097610 reported

n content pct 0.005 measured

pct q20 bases 90.3 measured

pct q30 bases 85.5 measured

pct reads q30 84.3 measured

sampled bases 65321596 measured

sampled reads 270273 measured

gc content pct 53.2 measured

polyg tail pct 0.01 measured

read length sd 32.8 measured

quality dropoff 3.2 measured

read length max 251 measured

read length min 35 measured

read length n50 251 measured

max base quality 40 measured

mean read length 241.7 measured

max n pct per pos 0.038 measured

mean base quality 34.1 measured

pct reads lt 100bp 1.98 measured

read length median 251 measured

adapter content pct 0 measured

median read quality 35.6 measured

duplication rate pct 8.06 measured

overrepresented top pct 0.04 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.5 measured ×1 78%

duplication rate pct 8.06 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0