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ERR2045157
ENAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
79/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
human gut metagenome
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
8.92
measured
checksum ok
yes
reported
total bases
13552837000
reported
total reads
67764185
reported
n content pct
0.005
measured
pct q20 bases
98.6
measured
pct q30 bases
95.8
measured
pct reads q30
96.4
measured
sampled bases
88692700
measured
sampled reads
886927
measured
gc content pct
42.4
measured
polyg tail pct
0.01
measured
read length sd
0
measured
quality dropoff
-1.2
measured
read length max
100
measured
read length min
100
measured
read length n50
100
measured
max base quality
40
measured
mean read length
100
measured
max n pct per pos
0.362
measured
mean base quality
37.1
measured
pct reads lt 100bp
0
measured
read length median
100
measured
adapter content pct
19.8
measured
median read quality
38.1
measured
duplication rate pct
1.19
measured
overrepresented top pct
0.01
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 79/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95.8
measured
×1
100%
duplication rate pct
1.19
measured
×0.5
100%
adapter content pct
19.8
measured
×0.4
0%
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0