ERR2438055

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome short-read sequencing from NovaSeq 6000 with exceptional quality (96.7% Q30), ~30x coverage, and 313M reads; ideal for diploid genotyping and rare-variant discovery across the human genome.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 94114838100 reported

total reads 313716127 reported

mean coverage 30.4 extrapolated

n content pct 0 measured

pct q20 bases 98 measured

pct q30 bases 96.7 measured

gc content pct 41.2 measured

mean read length 150 measured

mean base quality 36.3 measured

adapter content pct 0 measured

duplication rate pct 4.61 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 30.4 extrapolated ×1.2 100%

pct q30 bases 96.7 measured ×1 100%

duplication rate pct 4.61 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0