← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Sphaeroforma napiecek
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
4286132844
reported
total reads
7119822
reported
n content pct
0
measured
pct q20 bases
88.1
measured
pct q30 bases
83.8
measured
gc content pct
46.8
measured
mean read length
301
measured
mean base quality
33.9
measured
adapter content pct
70.75
measured
duplication rate pct
38.48
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
83.8
measured
×1
69%
mean base quality
33.9
measured
×0.6
98%
adapter content pct
70.75
measured
×0.4
0%
duplication rate pct
38.48
measured
×0.4
81%
QC cost
30 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0