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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
44/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Canis lupus familiaris
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
108936831259
reported
total reads
364710071
reported
n content pct
0.047
measured
pct q20 bases
83.8
measured
pct q30 bases
71.5
measured
gc content pct
58.7
measured
mean read length
149.5
measured
mean base quality
32.8
measured
adapter content pct
0.03
measured
duplication rate pct
16.6
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 44/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
71.5
measured
×1
8%
duplication rate pct
16.6
measured
×0.5
73%
adapter content pct
0.03
measured
×0.4
100%
QC cost
13 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0