Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

ERR313213

ENA

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole genome sequencing (goat). Grade A quality (100/100) matching peer replicates in this project. Q30 of 96.5% and duplication of 1.35% with zero adapter content are hallmarks of excellent WGS. Highly reusable.

Data type / assay
WGS
Organism
Capra hircus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 38563235073 reported
total reads 194486655 reported
n content pct 0.002 measured
pct q20 bases 99.3 measured
pct q30 bases 96.5 measured
gc content pct 42.9 measured
mean read length 100.3 measured
mean base quality 37.4 measured
adapter content pct 0 measured
duplication rate pct 1.35 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%
duplication rate pct 1.35 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89