Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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ERR3712008

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

54/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina MiSeq targeted-capture sequencing of the carnivorous plant Nepenthes kerrii (718k reads, 432 Mb, 45.5% GC) with moderate quality (91.2% Q20, 82.1% Q30, zero N). Enables coding-region variant discovery in this understudied plant. Slightly lower Q30 reflects MiSeq platform baseline but remains adequate for variant calling.

Data type / assay
WES
Organism
Nepenthes kerrii
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 432327504 reported
total reads 718152 reported
n content pct 0 measured
pct q20 bases 91.2 measured
pct q30 bases 82.1 measured
gc content pct 45.5 measured
mean read length 301 measured
mean base quality 33.6 measured
adapter content pct 22.68 measured
duplication rate pct 17.78 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 54/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.1 measured ×1 61%
duplication rate pct 17.78 measured ×0.5 83%
adapter content pct 22.68 measured ×0.4 0%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0