ERR3712175

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

63/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-exome capture-sequencing on MiSeq for Nepenthes biak (carnivorous plant) with good quality (91.2% Q20, 83.8% Q30). Exome approach targets coding regions for genetic-diversity assessment in this Nepenthes species.

Data type / assay

WES

Organism

Nepenthes biak

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 313797918 reported

total reads 521259 reported

n content pct 0.001 measured

pct q20 bases 91.2 measured

pct q30 bases 83.8 measured

gc content pct 44.8 measured

mean read length 301 measured

mean base quality 33.9 measured

adapter content pct 55.95 measured

duplication rate pct 10.73 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 63/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.8 measured ×1 69%

duplication rate pct 10.73 measured ×0.5 100%

adapter content pct 55.95 measured ×0.4 0%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0