ERR3773629

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk-RNA-seq on HiSeq 2000 for Cloeon dipterum with high quality (97.7% Q20, 96.2% Q30) and large read count. Comprehensive mayfly dataset supports detailed transcriptome assembly and multi-condition expression studies.

Data type / assay

bulk-RNA-seq

Organism

Cloeon dipterum

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4711548864 reported

total reads 30997032 reported

n content pct 0.012 measured

pct q20 bases 97.7 measured

pct q30 bases 96.2 measured

gc content pct 39.6 measured

mean read length 76 measured

mean base quality 38.2 measured

adapter content pct 0.38 measured

duplication rate pct 74.18 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%

mean base quality 38.2 measured ×0.6 100%

adapter content pct 0.38 measured ×0.4 100%

duplication rate pct 74.18 measured ×0.4 2%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0