Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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ERR4373988

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

NovaSeq 6000 bulk RNA-seq of Bemisia tabaci produced 30.9M reads (5.6 Gb, 39.8% GC) with exceptional quality (95–99% bases at Q20–Q30), providing deep coverage for comprehensive transcriptome characterization and splice-variant discovery in this agricultural pest. The clean sequencing metrics and high read depth support sensitive quantification of condition-specific or developmental gene expression.

Data type / assay
bulk-RNA-seq
Organism
Bemisia tabaci
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5629457106 reported
total reads 30931083 reported
n content pct 0 measured
pct q20 bases 98.5 measured
pct q30 bases 95.1 measured
gc content pct 39.8 measured
mean read length 91 measured
mean base quality 36.2 measured
adapter content pct 0.05 measured
duplication rate pct 29.54 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%
mean base quality 36.2 measured ×0.6 100%
adapter content pct 0.05 measured ×0.4 100%
duplication rate pct 29.54 measured ×0.4 100%
QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0