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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
81/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Leptidea sinapis
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
2783039626
reported
total reads
18430726
reported
n content pct
0
measured
pct q20 bases
99
measured
pct q30 bases
96.8
measured
gc content pct
46
measured
mean read length
151
measured
mean base quality
36.5
measured
adapter content pct
11.86
measured
duplication rate pct
57.88
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 81/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
96.8
measured
×1
100%
mean base quality
36.5
measured
×0.6
100%
adapter content pct
11.86
measured
×0.4
45%
duplication rate pct
57.88
measured
×0.4
38%
QC cost
26 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0