Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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ERR479173

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 WGS of human genomic DNA produced 8M reads (1.2 Gb) with 100% Q20 and 95.6% Q30, but extrapolated coverage of only 0.4× severely limits utility to rare-variant validation or targeted augmentation rather than independent genome sequencing. The unusual 100% Q20 warrants quality-score assessment; human WGS, variant calling, and exome validation searches apply, though reuse is conditional on understanding this dataset's shallow coverage limitation.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1285825369 reported
total reads 8021510 reported
mean coverage 0.4 extrapolated
n content pct 0 measured
pct q20 bases 100 measured
pct q30 bases 95.6 measured
gc content pct 46.7 measured
mean read length 78.9 measured
mean base quality 36.9 measured
adapter content pct 0.24 measured
duplication rate pct 2.17 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.4 extrapolated ×1.2 0%
pct q30 bases 95.6 measured ×1 100%
duplication rate pct 2.17 measured ×0.5 100%
adapter content pct 0.24 measured ×0.4 100%
QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0