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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
91/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Mycobacterium tuberculosis complex sp.
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
784612642
reported
total reads
3884221
reported
n content pct
0.002
measured
pct q20 bases
95.5
measured
pct q30 bases
88.3
measured
gc content pct
64.8
measured
mean read length
101
measured
mean base quality
34
measured
adapter content pct
0.65
measured
duplication rate pct
13.35
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 91/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
88.3
measured
×1
92%
duplication rate pct
13.35
measured
×0.5
83%
adapter content pct
0.65
measured
×0.4
100%
QC cost
14 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0