ERR551379

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2500 whole-genome sequencing of Mycobacterium tuberculosis complex (590.6k reads, 338.5 Mb, 65% GC) with moderate quality (91.3% Q20, 80% Q30, 0.006% N). Limited utility for sensitive variant calling. Reuse requires stringent quality filtering and validation.

Data type / assay

WGS

Organism

Mycobacterium tuberculosis complex sp.

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 338518559 reported

total reads 590637 reported

n content pct 0.006 measured

pct q20 bases 91.3 measured

pct q30 bases 80 measured

gc content pct 65 measured

mean read length 284.9 measured

mean base quality 33.5 measured

adapter content pct 0 measured

duplication rate pct 5.93 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80 measured ×1 50%

duplication rate pct 5.93 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0