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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
61/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Bos taurus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
681223609
reported
total reads
2537295
reported
mean coverage
0.3
extrapolated
n content pct
0.012
measured
pct q20 bases
97.2
measured
pct q30 bases
96.2
measured
gc content pct
48.2
measured
mean read length
133.4
measured
mean base quality
37
measured
adapter content pct
0
measured
duplication rate pct
1.51
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 61/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
0.3
extrapolated
×1.2
0%
pct q30 bases
96.2
measured
×1
100%
duplication rate pct
1.51
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
14 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0