Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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ERR571998

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

45/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

454 GS FLX Titanium WGS of the plant Fritillaria alfredae subsp. glaucoviridis yielded 101k long reads totaling 28.8 Mb with moderate quality (66–87% bases at Q20–Q30) typical of pyrosequencing chemistry and 35.6% GC. The long-read format suits structural variant discovery and de novo assembly of plant genomes, though the moderate base-level accuracy benefits from supplementary short-read polishing and is challenging for SNP-level reuse.

Data type / assay
WGS
Organism
Fritillaria alfredae subsp. glaucoviridis
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 28886860 reported
total reads 101853 reported
n content pct 0.012 measured
pct q20 bases 86.7 measured
pct q30 bases 66.6 measured
gc content pct 35.6 measured
mean read length 283.6 measured
mean base quality 31 measured
adapter content pct 0 measured
duplication rate pct 10.74 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 45/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 66.6 measured ×1 0%
duplication rate pct 10.74 measured ×0.5 91%
adapter content pct 0 measured ×0.4 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0