Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

ERR572004

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

39/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

454 GS FLX Titanium WGS of the plant Fritillaria sewerzowii produced 100k long reads totaling 35.5 Mb with moderate quality (58–83% bases at Q20–Q30) typical of Roche pyrosequencing and 34.4% GC. The long-read format supports de novo plant genome assembly and structural variant discovery, though reuse requires familiarity with 454-specific homopolymer errors and integration with short-read data for base-level accuracy improvement.

Data type / assay
WGS
Organism
Fritillaria sewerzowii
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 35539957 reported
total reads 100430 reported
n content pct 0.024 measured
pct q20 bases 83.2 measured
pct q30 bases 58.4 measured
gc content pct 34.4 measured
mean read length 353.9 measured
mean base quality 30 measured
adapter content pct 0 measured
duplication rate pct 17.57 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 39/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 58.4 measured ×1 0%
duplication rate pct 17.57 measured ×0.5 70%
adapter content pct 0 measured ×0.4 100%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0