ERR688424

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

63/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

human gut metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 72666878 reported

total reads 864213 reported

n content pct 0 measured

pct q20 bases 92.7 measured

pct q30 bases 75.8 measured

gc content pct 48 measured

mean read length 83.9 measured

mean base quality 32.6 measured

adapter content pct 0 measured

duplication rate pct 2.37 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 63/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 75.8 measured ×1 29%

duplication rate pct 2.37 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0