ERR8562402

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Saccharomyces cerevisiae

Instrument

PromethION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.18 measured

checksum ok yes reported

total bases 8660827175 reported

total reads 804036 reported

mean coverage 721.7 extrapolated

n content pct 0 measured

pct q20 bases 25.9 measured

pct q30 bases 1.3 measured

pct reads q30 0 measured

sampled bases 52248192 measured

sampled reads 4860 measured

gc content pct 36.7 measured

polyg tail pct 0 measured

read length sd 12194.5 measured

quality dropoff 0.7 measured

read length max 116308 measured

read length min 195 measured

read length n50 20212 measured

max base quality 31 measured

mean read length 10750.7 measured

max n pct per pos 0 measured

mean base quality 14.3 measured

pct reads lt 100bp 0 measured

read length median 5955 measured

adapter content pct 0.04 measured

median read quality 14.6 measured

duplication rate pct 0.08 measured

overrepresented top pct 0.1 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 721.7 extrapolated ×1.2 100%

read length n50 20212 measured ×1 100%

mean base quality 14.3 measured ×0.8 43%

duplication rate pct 0.08 measured ×0.5 100%

adapter content pct 0.04 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0