ERR8562403

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Saccharomyces cerevisiae

Instrument

PromethION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 9.26 measured

checksum ok yes reported

total bases 4472276739 reported

total reads 459681 reported

mean coverage 372.7 extrapolated

n content pct 0 measured

pct q20 bases 26.2 measured

pct q30 bases 1.4 measured

pct reads q30 0 measured

sampled bases 52381599 measured

sampled reads 5523 measured

gc content pct 35.3 measured

polyg tail pct 0.02 measured

read length sd 11703.6 measured

quality dropoff 0.8 measured

read length max 101046 measured

read length min 136 measured

read length n50 19023 measured

max base quality 31 measured

mean read length 9484.3 measured

max n pct per pos 0 measured

mean base quality 14.4 measured

pct reads lt 100bp 0 measured

read length median 4835 measured

adapter content pct 0 measured

median read quality 14.7 measured

duplication rate pct 0 measured

overrepresented top pct 0.02 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 372.7 extrapolated ×1.2 100%

read length n50 19023 measured ×1 94%

mean base quality 14.4 measured ×0.8 44%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0