ERR8562404

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Saccharomyces cerevisiae

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 9.16 measured

checksum ok yes reported

total bases 1942951936 reported

total reads 244625 reported

mean coverage 161.9 extrapolated

n content pct 0 measured

pct q20 bases 30.6 measured

pct q30 bases 1.3 measured

pct reads q30 0 measured

sampled bases 51843133 measured

sampled reads 6485 measured

gc content pct 37.1 measured

polyg tail pct 0.14 measured

read length sd 6669.7 measured

quality dropoff 0.2 measured

read length max 65966 measured

read length min 76 measured

read length n50 11970 measured

max base quality 30 measured

mean read length 7994.3 measured

max n pct per pos 0 measured

mean base quality 15.2 measured

pct reads lt 100bp 0.02 measured

read length median 7081 measured

adapter content pct 0.05 measured

median read quality 15.6 measured

duplication rate pct 0 measured

overrepresented top pct 0.02 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 161.9 extrapolated ×1.2 100%

read length n50 11970 measured ×1 53%

mean base quality 15.2 measured ×0.8 52%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0.05 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0