ERR8562405

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Saccharomyces cerevisiae

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 8.02 measured

checksum ok yes reported

total bases 1890606166 reported

total reads 306092 reported

mean coverage 157.6 extrapolated

n content pct 0 measured

pct q20 bases 30.2 measured

pct q30 bases 1.2 measured

pct reads q30 0 measured

sampled bases 51666102 measured

sampled reads 8358 measured

gc content pct 37 measured

polyg tail pct 0.13 measured

read length sd 5090.6 measured

quality dropoff 0.2 measured

read length max 46137 measured

read length min 75 measured

read length n50 9636 measured

max base quality 30 measured

mean read length 6181.6 measured

max n pct per pos 0 measured

mean base quality 15.2 measured

pct reads lt 100bp 0.02 measured

read length median 5019.5 measured

adapter content pct 0.02 measured

median read quality 15.5 measured

duplication rate pct 0.02 measured

overrepresented top pct 0.02 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 157.6 extrapolated ×1.2 100%

read length n50 9636 measured ×1 39%

mean base quality 15.2 measured ×0.8 52%

duplication rate pct 0.02 measured ×0.5 100%

adapter content pct 0.02 measured ×0.4 100%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0