ERR899726

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 64824648084 reported

total reads 257240667 reported

mean coverage 20.9 extrapolated

n content pct 0.016 measured

pct q20 bases 91.5 measured

pct q30 bases 84.9 measured

gc content pct 39.1 measured

mean read length 126 measured

mean base quality 34.3 measured

adapter content pct 0.04 measured

duplication rate pct 0.44 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 20.9 extrapolated ×1.2 59%

pct q30 bases 84.9 measured ×1 75%

duplication rate pct 0.44 measured ×0.5 100%

adapter content pct 0.04 measured ×0.4 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0