ERX3387950

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq long-read (Mus musculus, MinION). Grade F, 33/100. Q30 nearly absent at 0.9% and mean quality Q14 (both measured) render transcript assembly unreliable. Not suitable for reuse.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7028355083 reported

total reads 5834882 reported

n content pct 0 measured

pct q20 bases 25.6 measured

pct q30 bases 0.9 measured

gc content pct 45.8 measured

mean read length 1160.2 measured

mean base quality 14 measured

adapter content pct 0 measured

duplication rate pct 1.24 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0.9 measured ×1 0%

mean base quality 14 measured ×0.6 0%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 1.24 measured ×0.4 100%

QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0