Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

ERX3990360

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

55/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human whole-genome long-read WGS via Oxford Nanopore PromethION with 70.5 billion bases across 3.6 million reads at ~23× coverage—capable of resolving structural variants, repetitive regions, and complex rearrangements beyond short-read limits. Lower base quality (30.9% Q20, 17.1% Q30) is typical of nanopore sequencing but sufficient for SV discovery and haplotype phasing. Strong for telomere-to-telomere genomics and population variation studies.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
PromethION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 70573580534 reported
total reads 3626223 reported
mean coverage 22.8 extrapolated
n content pct 0 measured
pct q20 bases 30.9 measured
pct q30 bases 17.1 measured
gc content pct 36.7 measured
mean read length 21030 measured
mean base quality 16.2 measured
adapter content pct 0 measured
duplication rate pct 0.04 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 55/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 22.8 extrapolated ×1.2 67%
pct q30 bases 17.1 measured ×1 0%
duplication rate pct 0.04 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0