Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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ERX3990371

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

48/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human whole-genome long-read WGS via Oxford Nanopore PromethION with 58.3 billion bases at 18.8× coverage—lowest base quality of three human PromethION datasets (17.4% Q20, 7.5% Q30), but adequate for structural variant calling and genome gap resolution. Best used as supplementary long-read data for scaffolding short-read assemblies rather than standalone variant calling.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
PromethION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 58391495159 reported
total reads 5578261 reported
mean coverage 18.8 extrapolated
n content pct 0 measured
pct q20 bases 17.4 measured
pct q30 bases 7.5 measured
gc content pct 35.8 measured
mean read length 6222.5 measured
mean base quality 10.6 measured
adapter content pct 0 measured
duplication rate pct 2.27 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 48/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 18.8 extrapolated ×1.2 49%
pct q30 bases 7.5 measured ×1 0%
duplication rate pct 2.27 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0