Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

ERX4517391

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human WGS with severe quality constraints on reusability. Extreme duplication (89.64%) – likely from PCR over-amplification – severely compromises variant calling and depth-based analysis; while base quality is acceptable (Q30=89.3%), the evidence strength is provisional (0.61), with coverage extrapolated rather than measured. Deep measured QC validation is needed before reuse.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 130518458032 reported
total reads 874844882 reported
mean coverage 42.1 extrapolated
n content pct 0 measured
pct q20 bases 95.8 measured
pct q30 bases 89.3 measured
gc content pct 44.2 measured
mean read length 149 measured
mean base quality 35.1 measured
adapter content pct 0.02 measured
duplication rate pct 89.64 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 42.1 extrapolated ×1.2 100%
pct q30 bases 89.3 measured ×1 97%
duplication rate pct 89.64 measured ×0.5 0%
adapter content pct 0.02 measured ×0.4 100%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0