ERX4639547

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

44/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Enterococcus faecalis long-read WGS via Oxford Nanopore GridION generating 784 million bases from 45.7K reads with 37.8% GC—capable of complete circular genome assembly and resolving mobile genetic elements despite low nanopore read quality (Q20: 33.4%, Q30: 1.7%). Suitable for antibiotic resistance gene mapping, plasmid characterization, and complete genome reconstruction in this nosocomial pathogen.

Data type / assay

WGS

Organism

Enterococcus faecalis

Instrument

GridION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 784333588 reported

total reads 45728 reported

n content pct 0 measured

pct q20 bases 33.4 measured

pct q30 bases 1.7 measured

gc content pct 37.8 measured

mean read length 18215.3 measured

mean base quality 15.8 measured

adapter content pct 0.07 measured

duplication rate pct 12.03 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 44/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 1.7 measured ×1 0%

duplication rate pct 12.03 measured ×0.5 87%

adapter content pct 0.07 measured ×0.4 100%

QC cost 53 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0