Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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ERX4787606

ENA first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Low-coverage long-read WGS of human genome with excellent intrinsic read quality but severely limited depth. Mean coverage of 4.8× (extrapolated, not measured) is far below the recommended 15–30× for variant discovery; evidence strength is provisional (0.61). While technical QC is outstanding (Q30=96.7%, mean quality=80.1), the depth limitation makes this unsuitable for reuse without significant additional sequencing.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Sequel
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 14728179848 reported
total reads 1212859 reported
mean coverage 4.8 extrapolated
n content pct 0 measured
pct q20 bases 98.6 measured
pct q30 bases 96.7 measured
gc content pct 40.7 measured
mean read length 12084.1 measured
mean base quality 80.1 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 4.8 extrapolated ×1.2 0%
pct q30 bases 96.7 measured ×1 100%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0