ERX697298

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Oak (Quercus robur) short-read WGS via HiSeq 2000 with 42.5 billion bases and 95.5% Q20—high-depth data for population genomics, admixture analysis, and adaptive variant discovery in this tree species. Similar quality metrics to ERX697296, enabling multi-individual pooled inference. Suitable for forest genetics and climate-adaptation studies.

Data type / assay

WGS

Organism

Quercus robur

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 42521091728 reported

total reads 88896954 reported

n content pct 0 measured

pct q20 bases 95.5 measured

pct q30 bases 92.4 measured

gc content pct 35.5 measured

mean read length 242.7 measured

mean base quality 37 measured

adapter content pct 1.53 measured

duplication rate pct 1.29 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.4 measured ×1 100%

duplication rate pct 1.29 measured ×0.5 100%

adapter content pct 1.53 measured ×0.4 96%

QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0