Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE100037

GEO first seen 2020

Single cell RNA sequencing data of bone marrow lymphoid progenitors

Organism
Mus musculus
Samples
39
Type
Expression profiling by high...
Submitted
2017-06-14

Using different surface markers it has been possible to isolate lymphoid lineage-biased progentors and test their potential in vivo and in vitro. Here we apply single cell sequencing of lymphoid progenitors to obtain further insights into differentiation and commitment to the lymphoid lineage.

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Josip S HermanSagarDominic Grün
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

63/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.007 measured
pct q20 bases 82.6 measured
pct q30 bases 76.7 measured
gc content pct 20.5 measured
mean read length 50 measured
mean base quality 31.7 measured
adapter content pct 0 measured
duplication rate pct 6.03 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 63/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.7 measured ×1 34%
mean base quality 31.7 measured ×0.6 62%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 6.03 measured ×0.4 100%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0