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Learning and age-related changes in genome-wide H2A.Z binding in the hippocampus
We characterize histone H2A.Z binding and RNA expression in the hippocampus of young (2.5 months) and aged (15.5 months) mice in response to contextual fear conditioning.
Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Iva B Zovkic
Reused by
- Learning and Age-Related Changes in Genome-wide H2A.Z Binding in... 2018 · 101 cites
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
36 / 36 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
181997057939
reported
total reads
726595137
reported
supplementary file types
TXT
reported
QC cost
5 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently