Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE100119

GEO first seen 2017

Genome editing reveals a role for OCT4 in human preimplantation development [MiSeq]

Organism
Homo sapiens; Mus musculus
Samples
244
Type
Other
Submitted
2017-06-16

Despite their fundamental biological and clinical importance, the molecular mechanisms that regulate the first cell fate decisions in the human embryo are not well understood. Here we use CRISPR?Cas9-mediated genome editing to investigate the function of the pluripotency transcription factor OCT4 during human embryogenesis. We identified an efficient OCT4-targeting guide RNA using an inducible human embryonic stem cell-based system and microinjection of mouse zygotes. Using these refined methods...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Norah FogartyAfshan McCarthyPaul BlakeleyKathy Niakan

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
other
Organism
Homo sapiens; Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
244 / 244 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 11084160394 reported
total reads 26457852 reported
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently