Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE100276

GEO first seen 2018

Epigenetic memory of obesity predisposes to colorectal cancer

Organism
Mus musculus
Samples
23
Type
Expression profiling by high...
Submitted
2017-06-20

Colorectal cancer (CRC) is the third most common cancer worldwide. Obesity is a major risk factor with long-lasting effects on the predisposition to CRC even after weight loss; however, the mechanistic underpinnings remain poorly understood. Using a diet-induced obesity mouse model, we profiled cell-intrinsic alterations in colonic epithelium from young and aged obese mice compared with their age-matched controls, to gain insights into the progression of obesity-associated dysregulations in colo...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Ruifang LiPaul A WadeSara A Grimm
Reused by

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

High-quality mouse bulk RNA-seq with strong technical metrics. Q30 bases (90.9%) and mean quality (33.7) enable reliable expression profiling; elevated duplication (38.16%) is typical of transcriptome experiments and scored accordingly. Highly reusable for differential expression and transcriptome-wide studies.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.002 measured
pct q20 bases 93.6 measured
pct q30 bases 90.9 measured
gc content pct 52.4 measured
mean read length 76 measured
mean base quality 33.7 measured
adapter content pct 0.06 measured
duplication rate pct 38.16 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.9 measured ×1 100%
mean base quality 33.7 measured ×0.6 95%
adapter content pct 0.06 measured ×0.4 100%
duplication rate pct 38.16 measured ×0.4 82%
QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0