Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE100298

GEO first seen 2017

Dyw2-DYW2_OTP100: Identification of the transcriptome defects (nuclear and organelles) of the T-DNA KO mutants of DYW2 and OTP100

Organism
Arabidopsis thaliana
Samples
12
Type
Expression profiling by high...
Submitted
2017-06-21

ngs2016_08_dyw2-dyw2-Identification of the transcriptome defects (nuclear and organelles) of the T-DNA KO mutants of DYW2 and OTP100-TheT-DNA KO mutations are embryo-ethal for DYW2 and OTP100 so the homozygous mutants were produced by a temporal embryo-specific complementation using the promoter of ABI3. The resulting homozygous mutants were compared to their WT siblings. The T-DNA lines were GK_332A07 for DYW2 and SAIL_784_A11 for OTP100

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Alex-avon AlaunayLudivine Soubigou-TaconnatEtienne Delannoy
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Arabidopsis thaliana
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
12 / 12 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 55266038276 reported
total reads 728072566 reported
supplementary file types TXT reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently