Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE100351

GEO first seen 2018

The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space

Organism
Homo sapiens
Samples
579
Type
Methylation profiling by hig...
Submitted
2017-06-22

Glioblastoma is characterized by widespread genetic and transcriptional heterogeneity, yet little is known about the role of the epigenome in glioblastoma disease progression. Here, we present genome-scale maps of DNA methylation in matched primary and recurring glioblastoma tumors, using data from a highly annotated clinical cohort that was selected through a national patient registry. We demonstrate the feasibility of DNA methylation mapping in a large set of routinely collected FFPE samples,...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Johanna KlughammerBarbara KieselThomas RoetzerNikolaus FortelnyAmelie NemcPaul DatlingerNadine PeterKarl-Heinz NenningJulia FurtnerMartha NowosielskiMarco AugustinMario MischkulnigThomas StröbelPatrizia MoserChristian F FreyschlagJohannes KerschbaumerClaudius ThoméAstrid E GramsGünther StockhammerMelitta KitzwoegererStefan OberndorferFranz MarholdSerge WeisJohannes TrenklerJohanna BuchroithnerJosef PichlerJohannes HaybaeckStefanie KrassnigKariem M AliGord von CampeFranz PayerCamillo SherifJulius PreiserThomas HauserPeter A WinklerWaltraud KleindienstFranz WürtzTanisa Brandner-KokaljMartin StultschnigStefan Schweiger

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
methylation
Organism
Homo sapiens
Files available
BED, RPKM, TXT
Metrics (value · how obtained)
supplementary file types BED, RPKM, TXT reported
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently