Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE100418

GEO first seen 2017

Epigenetic analysis of TCR signaling [Dnase-Seq]

Organism
Homo sapiens
Samples
2
Type
Other
Submitted
2017-06-23

DNaseI-Sequencing of unstimulated and PMA/Ionomycin-stimulated human T-blast cells

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Ruth BrignallPierre CauchySarah BevingtonBethany GormanAngela O PiscoJames BagnallChristopher BoddingtonWilliam RoweHazel EnglandKevin RichLorraine SchmidtNigel P DyerMark TravisSascha OttDean A JacksonPeter N CockerillPawel Paszek
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
other
Organism
Homo sapiens
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 / 2 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 3191315138 reported
total reads 43388937 reported
supplementary file types WIG reported
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently