Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE100532

GEO first seen 2017

Cardiomayocyte specific translating RNA sequencing from mice in heart failure

Organism
Mus musculus
Samples
18
Type
Expression profiling by high...
Submitted
2017-06-27

Mammalian organs vary widely in regenerative capacity, and poorly regenerative organs, such as the heart are particularly vulnerable to organ failure. Once established, heart failure commonly results in in considerable mortality and early demise. The Hippo pathway, a kinase cascade that prevents adult cardiomyocyte proliferation and regeneration, is upregulated in human heart failure. We show that deletion of the Hippo pathway component Salvador (Salv) in mouse hearts with established ischemic h...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
John P LeachJames F Martin
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Ion Torrent Proton
Platform
ION_TORRENT
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
23 / 18 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 24619551918 reported
total reads 262619573 reported
supplementary file types TXT reported
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently