Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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GSE100873

GEO first seen 2018

Mouse macropahge RNA-seq with or without virus infection

Organism
Mus musculus
Samples
4
Type
Expression profiling by high...
Submitted
2017-07-06

To investigate the role of lncRNAs in viral infection and their relationship with the IFN-I system, we profiled lncRNA expression in wild type (WT) and IFN-I receptor deficient (Ifnar-/-) cells infected with or without vesicular stomatitis virus (VSV).

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Pin WangXuetao Cao
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 53090156160 reported
total reads 294945312 reported
supplementary file types TDF reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently