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Mouse macropahge RNA-seq with or without virus infection
To investigate the role of lncRNAs in viral infection and their relationship with the IFN-I system, we profiled lncRNA expression in wild type (WT) and IFN-I receptor deficient (Ifnar-/-) cells infected with or without vesicular stomatitis virus (VSV).
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Pin WangXuetao Cao
Reused by
- Diabetes Mellitus–Induced Long Noncoding RNA <i>Dnm3os</i> Regul... 2018 · 113 cites
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
53090156160
reported
total reads
294945312
reported
supplementary file types
TDF
reported
QC cost
5 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently