GSE100892

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq (Danio rerio). A grade, excellent for reuse. Exceptional base quality (Q30=95.9%, mean Q=34.8), well-controlled duplication (30.22%), and comprehensive raw-read availability (FASTQ) ensure high-confidence transcript quantification across the full transcriptome.

Data type / assay

bulk-RNA-seq

Organism

Danio rerio

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

24 / 24 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 39580348636 reported

total reads 520794061 reported

n content pct 0.001 measured

pct q20 bases 96.9 measured

pct q30 bases 95.9 measured

gc content pct 45.9 measured

mean read length 76 measured

mean base quality 34.8 measured

adapter content pct 0.1 measured

duplication rate pct 30.22 measured

supplementary file types CSV reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.9 measured ×1 100%

mean base quality 34.8 measured ×0.6 100%

adapter content pct 0.1 measured ×0.4 100%

duplication rate pct 30.22 measured ×0.4 100%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0