Next Generation Sequencing of total RNA from 9 bladder cancer cell lines and 3 fractionated bladder cancer cell lines
We profile the cell line expression of 279 circRNAs, that are highly expressed across 457 bladder cancer patient samples. Additionally, we investigate their cellular location in fractionated cell lines
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- Circular RNA expression is abundant and correlated to aggressive... 2017 · 136 cites
Deep data QC
95/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Human bulk RNA-seq with high base quality (96.4% Q20, 90.4% Q30, 101 bp reads, mean quality 35.3) and 6.48% adapter content despite GEO metadata unavailability. Excellent base metrics indicate high-quality library preparation. Gene expression profiling and isoform discovery are well-supported; full experimental context requires contact with data submitters or GEO curators.
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0