Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE10143

GEO first seen 2018

Gene Expression in Fixed Tissues and Outcome in Hepatocellular Carcinoma

Organism
Homo sapiens
Samples
387
Type
Expression profiling by arra...
Submitted
2008-01-10

Background: It is a challenge to identify those patients who, after undergoing potentially curative treatments for hepatocellular carcinoma, are at greatest risk of recurrence. Such high-risk patients could receive novel interventional measures. An obstacle to the development of genome-based predictors of outcome in patients with hepatocellular carcinoma has been the lack of a means to carry out genomewide expression profiling of fixed, as opposed to frozen, tissues. Methods: We aimed to demonst...

Provenance — who produced it, who reused it

Linked to 40 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Yujin HoshidaAugusto VillanuevaMasahiro KobayashiJudit PeixDerek ChiangAmy CamargoSupriya GuptaJamie MooreMatthew J WrobelJim LernerMichael ReichJennifer A ChanKenji IkedaMasashi HashimotoGoro WatanabeSasan RoayaieMyron SchwartzSwan ThungStacey GabrielVincenzo MazzaferroJordi BruixScott FriedmanHiromitsu KumadaJosep M LlovetTodd R Golub
Reused by

34 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
TXT
Metrics (value · how obtained)
supplementary file types TXT reported
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently