← Dataset search
Profiling of differential RNAs in SORBS2-depleted ovarian cancer cells and control cells
In this study, we examined the differential RNA profile of SORBS2-depleted ovarian cancer cells compared with control cells
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Shengtao Zhou
Reused by
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
17527806900
reported
total reads
116852046
reported
n content pct
0.005
measured
pct q20 bases
96
measured
pct q30 bases
90.2
measured
gc content pct
49.8
measured
mean read length
150
measured
mean base quality
37.7
measured
adapter content pct
0.28
measured
duplication rate pct
18.31
measured
supplementary file types
XLSX
reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
90.2
measured
×1
100%
mean base quality
37.7
measured
×0.6
100%
adapter content pct
0.28
measured
×0.4
100%
duplication rate pct
18.31
measured
×0.4
100%
QC cost
36 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0