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PGK cleavage mapping
Mapping 3'ends of cleaved mRNAs derived from a reporter that is subject to no-go decay for the purpose of characterizing the cleavage reaction.
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Hani S ZaherCarrie L Simms
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
other
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 / 3 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
868721850
reported
total reads
17374437
reported
supplementary file types
XLS
reported
QC cost
5 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently