Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE101992

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk-RNA-seq by high-throughput expression profiling with 50 bp reads at 97.8% Q20 and 94.8% Q30 across 1.66 billion bases provides good quality for RNA quantification. The 50.1% GC and mean quality 36.5 enable reliable expression profiling for developmental, tissue, or disease-state comparisons in murine models.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Files available
XLSX
Metrics (value · how obtained)
n content pct 0.002 measured
pct q20 bases 97.8 measured
pct q30 bases 94.8 measured
gc content pct 50.1 measured
mean read length 50 measured
mean base quality 36.5 measured
adapter content pct 0.01 measured
duplication rate pct 33.56 measured
supplementary file types XLSX reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.8 measured ×1 100%
mean base quality 36.5 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 33.56 measured ×0.4 92%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 94